Source code for earm.lopez_direct

"""
Model M2a: Extrinsic apoptosis model with expanded "direct" model of MOMP.
"""

from pysb import *
from earm import shared
from earm import lopez_modules
from earm import albeck_modules

Model()

# Declare monomers
albeck_modules.ligand_to_c8_monomers()
lopez_modules.momp_monomers()
albeck_modules.apaf1_to_parp_monomers()

# Generate the upstream and downstream sections
albeck_modules.rec_to_bid()
albeck_modules.pore_to_parp()

# The specific MOMP model to use
lopez_modules.direct()

# Declare shared observables
shared.observables()