Source code for earm.mito.cui_direct1

"""
Model M13b: "Direct 1" MOMP model from [Cui2008]_.
"""

from pysb import *
from earm import shen_modules

Model()

shen_modules.momp_monomers()

# The specific MOMP model to use
shen_modules.cui_direct1()

# Observables
Observable('AcBax_', Bax(bf=None, state='A'))
#Observable('Bax4_', MatchOnce(Bax(bf=None, s1=1, s2=4) %
#                              Bax(bf=None, s1=2, s2=1) %
#                              Bax(bf=None, s1=3, s2=2) %
#                              Bax(bf=None, s1=4, s2=3)))
Observable('Bid_', Bid(bf=None))
Observable('Bad_', Bad(bf=None))
Observable('Bcl2_', Bcl2(bf=None))
Observable('Bcl2_Bad_', Bcl2(bf=1) % Bad(bf=1))
Observable('Bcl2_Bid_', Bcl2(bf=1) % Bid(bf=1))
Observable('Bcl2_Bax_', Bcl2(bf=1) % Bax(bf=1))